affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: Development (2.8)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("affycoretools")    

Documentation

PDF	R Script	affycoretools biomaRt Integration
PDF	R Script	affycoretools Overview

Reference Manual

Details

biocViews	ReportWriting, Microarray, OneChannel, GeneExpression
Depends	affy, Biobase, GO.db, KEGG.db
Imports	biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi
Suggests	affydata, hgfocuscdf, rgl
System Requirements
License	Artistic-2.0
URL
Depends On Me	AgiMicroRna
Imports Me
Suggests Me	Agi4x44PreProcess
Version	1.23.1

Package Downloads

Package Source	affycoretools_1.23.1.tar.gz
Windows Binary	affycoretools_1.23.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	affycoretools_1.23.1.tgz
Package Downloads Report	Download Stats