limma

Linear Models for Microarray Data

Bioconductor version: Release (2.7)

Data analysis, linear models and differential expression for microarray data.

Author: Gordon Smyth with contributions from Matthew Ritchie, Jeremy Silver, James Wettenhall, Natalie Thorne, Mette Langaas, Egil Ferkingstad, Marcus Davy, Francois Pepin, Dongseok Choi, Davis McCarthy, Di Wu, Alicia Oshlack, Carolyn de Graaf, Yifang Hu, Wei Shi and Belinda Phipson.

Maintainer: Gordon Smyth

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("limma")    

Documentation

PDF limma.pdf
PDF usersguide.pdf

Reference Manual

Details

biocViews Microarray, OneChannel, TwoChannel, DataImport, QualityControl, Preprocessing, Bioinformatics, DifferentialExpression, MultipleComparisons, TimeCourse
Depends R, methods
Imports
Suggests affy, MASS, org.Hs.eg.db, splines, statmod, vsn
System Requirements
License LGPL
URL http://bioinf.wehi.edu.au/limma
Depends On Me AffyExpress, Agi4x44PreProcess, AgiMicroRna, CALIB, ChIPpeakAnno, HTqPCR, LVSmiRNA, RMAGEML, RTools4TB, Ringo, affylmGUI, cghMCR, clippda, coRNAi, codelink, convert, limmaGUI, maDB, maigesPack, marray, nem, oneChannelGUI, qpcrNorm, snapCGH
Imports Me ArrayExpress, ArrayTools, CALIB, ChIPpeakAnno, HTqPCR, OLIN, PatientGeneSets, RNAither, Ringo, SSPA, affycoretools, arrayQualityMetrics, arrayQuality, attract, beadarray, betr, edgeR, explorase, iChip, maSigPro, snapCGH, timecourse, vsn
Suggests Me ABarray, BioNet, BiocCaseStudies, CMA, Category, GEOquery, GeneSelector, beadarraySNP, dyebias, les, lumi, methylumi, oligo, plw, puma, rtracklayer
Version 3.6.9

Package Downloads

Package Source limma_3.6.9.tar.gz
Windows Binary limma_3.6.9.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary limma_3.6.9.tgz
Package Downloads Report Download Stats

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