annotate

Annotation for microarrays

Bioconductor version: Release (2.7)

Using R enviroments for annotation.

Author: R. Gentleman

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("annotate")    

Documentation

PDF R Script Annotation Overview
PDF R Script Basic GO Usage
PDF R Script HowTo: Get HTML Output
PDF R Script HowTo: use chromosomal information
PDF R Script HOWTO: Use the online query tools
PDF R Script Using Affymetrix Probe Level Data
PDF R Script Using Data Packages
PDF R Script Using the homology package

Reference Manual

Details

biocViews Annotation, Pathways, GO, Affymetrix
Depends R, AnnotationDbi
Imports Biobase, AnnotationDbi, DBI, xtable, graphics, utils, stats, methods
Suggests Biobase, hgu95av2.db, genefilter, Biostrings, rae230a.db, rae230aprobe, tkWidgets, XML, GO.db, org.Hs.eg.db, org.Mm.eg.db, hom.Hs.inp.db
System Requirements
License Artistic-2.0
URL
Depends On Me Agi4x44PreProcess, ChromHeatMap, GGtools, GSEABase, GeneAnswers, MLInterfaces, PCpheno, RpsiXML, ScISI, geneplotter, idiogram, macat, ontoTools, safe
Imports Me Category, ChromHeatMap, GOstats, GSEABase, GeneAnswers, GlobalAncova, ScISI, affycoretools, codelink, genefilter, geneplotter, globaltest, lumi, qpgraph, safe, splicegear, tigre
Suggests Me BiocCaseStudies, GOstats, GSEAlm, GlobalAncova, biomaRt, geneplotter, globaltest, maigesPack, oneChannelGUI, puma, siggenes, tigre
Version 1.28.1

Package Downloads

Package Source annotate_1.28.1.tar.gz
Windows Binary annotate_1.28.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary annotate_1.28.1.tgz
Package Downloads Report Download Stats

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