affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: Release (2.7)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("affycoretools")    

Documentation

PDF R Script affycoretools biomaRt Integration
PDF R Script affycoretools Overview

Reference Manual

Details

biocViews ReportWriting, Microarray, OneChannel, GeneExpression
Depends affy, Biobase, GO.db, KEGG.db
Imports biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi
Suggests affydata, hgfocuscdf, rgl
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me Agi4x44PreProcess, AgiMicroRna
Version 1.22.0

Package Downloads

Package Source affycoretools_1.22.0.tar.gz
Windows Binary affycoretools_1.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary affycoretools_1.22.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center