Rolexa

Statistical analysis of Solexa sequencing data

Bioconductor version: Release (2.7)

Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data

Author: Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef

Maintainer: Jacques Rougemont

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("Rolexa")    

Documentation

PDF

R Script

Rolexa

Reference Manual

Details

biocViews	Sequencing, DataImport, Preprocessing, QualityControl
Depends	R, mclust, graphics, grDevices, methods, ShortRead
Imports	Biostrings, graphics, grDevices, IRanges, methods, ShortRead, stats
Suggests
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version	1.6.0

Package Downloads

Package Source	Rolexa_1.6.0.tar.gz
Windows Binary	Rolexa_1.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	Rolexa_1.6.0.tgz
Package Downloads Report	Download Stats