MEDIPS

MeDIP-Seq data analysis

Bioconductor version: Release (2.7)

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-Seq). Nevertheless, functionalities like the quality controls may be applied to other types of sequencing data (e.g. ChIP-Seq). MEDIPS adresses several aspects in the context of MeDIP-Seq data analysis.

Author: Lukas Chavez, Joern Dietrich

Maintainer: Lukas Chavez

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("MEDIPS")    

Documentation

PDF

R Script

MEDIPS

Reference Manual

Details

biocViews	Sequencing
Depends	R, BSgenome
Imports	Biostrings, BSgenome, graphics, gtools, IRanges, methods, stats, utils
Suggests	BSgenome, BSgenome.Hsapiens.UCSC.hg19
System Requirements
License	GPL (>=2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0

Package Downloads

Package Source	MEDIPS_1.0.0.tar.gz
Windows Binary	MEDIPS_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	MEDIPS_1.0.0.tgz
Package Downloads Report	Download Stats