GeneticsBase

Classes and functions for handling genetic data

Bioconductor version: Development (2.7)

The R Genetics Project is a collaborative effort to develop a complete set of tools for storing, accessing, manipulating, and analyzing genetics data, from small candidate-gene studies consisting of a few genetic markers to large whole-genome studies containing hundreds of thousands of markers. This package (GeneticsBase) provides a foundation of efficient data structures and easy-to-use manipulation functions.

Author: Gregory Warnes Ross Lazarus Scott D Chasalow Giovanni Montana Michael O'Connell Junsheng Cheng Nitin Jain

Maintainer: The R Genetics Project

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GeneticsBase")    

Documentation

PDF CAMP_alleleSummary_html.pdf
PDF CAMP_genotypeSummary_html.pdf
PDF CAMP_LD_html.pdf
PDF HOWTO-LoadGenotypes.pdf
PDF SummaryTables.pdf
PDF Tutorial.pdf

Reference Manual

Details

biocViews Genetics
Depends R, methods, combinat
Imports gdata, gplots, gtools, graphics, grDevices, methods, stats, utils, xtable
Suggests GeneticsDesign, fbat
System Requirements
License LGPL
URL
Depends On Me fbat
Imports Me fbat
Suggests Me

Package Downloads

Package Source GeneticsBase_1.15.0.tar.gz
Windows Binary GeneticsBase_1.15.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GeneticsBase_1.15.0.tgz
Package Downloads Report Download Stats

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