GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: Release (2.7)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis

Maintainer: Sean Davis

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GEOquery")    

Documentation

PDF GEOquery.pdf

Reference Manual

Details

biocViews Microarray, DataImport, OneChannel, TwoChannel, SAGE
Depends methods, Biobase
Imports XML, RCurl
Suggests limma, RUnit
System Requirements
License GPL-2
URL http://watson.nci.nih.gov/~sdavis
Depends On Me GEOmetadb
Imports Me SRAdb
Suggests Me PGSEA, dyebias
Version 2.16.3

Package Downloads

Package Source GEOquery_2.16.3.tar.gz
Windows Binary GEOquery_2.17.4.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GEOquery_2.16.3.tgz
Package Downloads Report Download Stats

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