BCRANK

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: Release (2.7)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur

Maintainer: Adam Ameur

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("BCRANK")    

Documentation

PDF R Script BCRANK
PDF BCRANK_intro_fig1.pdf
PDF BCRANK_intro_fig2.pdf

Reference Manual

Details

biocViews SequenceMatching
Depends methods
Imports Biostrings
Suggests seqLogo
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.12.0

Package Downloads

Package Source BCRANK_1.12.0.tar.gz
Windows Binary BCRANK_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary BCRANK_1.12.0.tgz
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