dyebias

The GASSCO method, for correcting for slide-depedent gene-specific dye bias

Bioconductor version: 2.6

Gene-specific dye-bias correction of two-color microarray data using the GASSCO method described in Margaritis et al. Mol. Sys. Biol. 5:266 (2009) doi:10.1038/msb.2009.21

Author: Philip Lijnzaad and Thanasis Margaritis

Maintainer: Philip Lijnzaad

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("dyebias")    

Documentation

PDF	R Script	dye bias correction
PDF		dyebiasCompleteVignette.pdf
PDF		gassco.pdf

Reference Manual

Details

biocViews	Microarray, TwoChannel, QualityControl, Preprocessing
Depends	R, marray, Biobase
Imports
Suggests	limma, convert, GEOquery, dyebiasexamples, methods
System Requirements
License	GPL-3
URL	http://www.holstegelab.nl/publications/margaritis_lijnzaad
Depends On Me
Imports Me
Suggests Me
Version	1.6.0

Package Downloads

Package Source	dyebias_1.6.0.tar.gz
Windows Binary	dyebias_1.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	dyebias_1.6.0.tgz
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