chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: 2.6

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("chipseq")    

Documentation

PDF

R Script

A Sample ChIP-Seq analysis workflow

Reference Manual

Details

biocViews	Infrastructure, Bioinformatics
Depends	methods, IRanges, GenomicRanges, BSgenome, ShortRead
Imports	BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats
Suggests	GenomicFeatures, GenomicFeatures.Mmusculus.UCSC.mm9, GenomicFeatures.Hsapiens.UCSC.hg18, BSgenome.Mmusculus.UCSC.mm9
System Requirements
License	Artistic-2.0
URL
Depends On Me	PICS
Imports Me
Suggests Me	oneChannelGUI
Version	0.4.1

Package Downloads

Package Source	chipseq_0.4.1.tar.gz
Windows Binary	chipseq_0.4.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	chipseq_0.4.1.tgz
Package Downloads Report	Download Stats