PICS

Probabilistic inference of ChIP-seq

Bioconductor version: 2.6

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang, Raphael Gottardo

Maintainer: Arnaud Droit , Xuekui Zhang , Raphael Gottardo

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("PICS")    

Documentation

PDF

R Script

The PICS users guide

Reference Manual

Details

biocViews	Clustering, Statistics, Visualization, Sequencing, ChIPseq
Depends	R, IRanges, GenomicRanges, BSgenome, chipseq
Imports	IRanges, GenomicRanges, BSgenome, methods, graphics, grDevices, stats
Suggests	snowfall, ShortRead, rtracklayer
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.6

Package Downloads

Package Source	PICS_1.0.6.tar.gz
Windows Binary	PICS_1.0.6.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	PICS_1.0.6.tgz
Package Downloads Report	Download Stats