Biobase

Biobase: Base functions for Bioconductor

Bioconductor version: 2.6

Functions that are needed by many other packages or which replace R functions.

Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("Biobase")    

Documentation

PDF	R Script	An introduction to Biobase and ExpressionSets
PDF	R Script	Bioconductor Overview
PDF	R Script	esApply Introduction
PDF	R Script	Notes for eSet developers
PDF	R Script	Notes for writing introductory 'how to' documents
PDF	R Script	quick views of eSet instances

Reference Manual

Details

biocViews	Infrastructure, Bioinformatics
Depends	R, methods, utils
Imports
Suggests	tools, tkWidgets, ALL
System Requirements
License	Artistic-2.0
URL
Depends On Me	ABarray, ACME, AffyTiling, Agi4x44PreProcess, AgiMicroRna, AnnotationDbi, ArrayExpress, ArrayTools, BicARE, BioMVCClass, BiocCaseStudies, CGHbase, CGHcall, CGHregions, CMA, Category, DESeq, DFP, EBarrays, GEOquery, GGBase, GGtools, GOstats, GSEABase, GSEAlm, GeneAnswers, GeneMeta, GeneRegionScan, GeneSelectMMD, GeneSpring, GeneTraffic, HELP, HEM, HTqPCR, LMGene, MLInterfaces, MergeMaid, Mfuzz, MiChip, MiPP, OLIN, OrderedList, OutlierD, PAnnBuilder, PGSEA, PLPE, PROMISE, RMAGEML, RTCA, RTools4TB, RbcBook1, RefPlus, Resourcerer, Ringo, Rmagpie, RpsiXML, Rtreemix, SNPchip, SpeCond, XDE, affyContam, affyPLM, affyQCReport, affy, affycomp, affycoretools, affylmGUI, altcdfenvs, annaffy, annotationTools, arrayMvout, beadarraySNP, beadarray, bgx, bioDist, cellHTS2, cellHTS, charm, clippda, clusterStab, codelink, convert, copa, crlmm, ddCt, dualKS, dyebias, edd, eisa, factDesign, flowClust, flowCore, frma, gaga, geneRecommender, geneplotter, genomeIntervals, goProfiles, hopach, idiogram, iterativeBMA, lumi, maDB, maSigPro, macat, methylumi, multtest, oligoClasses, oneChannelGUI, ontoTools, panp, pcaMethods, pcot2, pdInfoBuilder, pdmclass, plgem, prada, puma, qpcrNorm, qpgraph, rHVDM, rMAT, rbsurv, reb, safe, siggenes, simpleaffy, spkTools, splicegear, tigre, tilingArray, timecourse, topGO, tspair, twilight, vsn, webbioc
Imports Me	AgiMicroRna, AnnotationDbi, ArrayTools, BioSeqClass, Biostrings, CGHnormaliter, Category, ChromHeatMap, ConsensusClusterPlus, GEOsubmission, GOstats, GSEABase, GeneMeta, GeneRegionScan, GeneSelectMMD, GeneSelector, HTqPCR, MCRestimate, MiChip, PAnnBuilder, PCpheno, PROMISE, Rmagpie, Rtreemix, SAGx, SLGI, SNPchip, ShortRead, aCGH, adSplit, affy, annotate, arrayQualityMetrics, betr, biocViews, charm, cycle, ecolitk, flowCore, flowFP, flowFlowJo, flowMeans, flowStats, flowUtils, flowViz, frmaTools, frma, gcrma, genefilter, geneplotter, girafe, globaltest, iFlow, lapmix, mBPCR, maSigPro, makePlatformDesign, makecdfenv, matchprobes, metaArray, methylumi, multiscan, oligo, plateCore, ppiStats, prada, puma, qpgraph, rMAT, rflowcyt, rtracklayer, safe, simpleaffy, spkTools, splicegear, tigre, topGO
Suggests Me	BSgenome, BiocCaseStudies, Category, GlobalAncova, ROC, annotate, betr, biocDatasets, biocViews, genefilter, geneplotter, globaltest, hexbin, nem, pkgDepTools, tkWidgets, vbmp, widgetTools
Version	2.8.0

Package Downloads

Package Source	Biobase_2.8.0.tar.gz
Windows Binary	Biobase_2.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	Biobase_2.8.0.tgz
Package Downloads Report	Download Stats