spotSegmentation

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

Bioconductor version: 2.5

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Author: Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington

Maintainer: Chris Fraley

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("spotSegmentation")    

Documentation

PDF

spotsegdoc.pdf

Reference Manual

Details

biocViews	Microarray, TwoChannel, QualityControl, Preprocessing
Depends	R, mclust
Imports
Suggests
System Requirements
License	GPL (>= 2)
URL	http://www.stat.washington.edu/fraley
Depends On Me
Imports Me
Suggests Me
Version	1.20.0

Package Downloads

Package Source	spotSegmentation_1.20.0.tar.gz
Windows Binary	spotSegmentation_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	spotSegmentation_1.20.0.tgz
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