marray

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 2.5

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("marray")    

Documentation

PDF		ExampleHTML.pdf
PDF	R Script	marray Normalization
PDF	R Script	marray Overview
PDF	R Script	marrayClasses Overview
PDF	R Script	marrayClasses Tutorial (short)
PDF	R Script	marrayInput Introduction
PDF	R Script	marrayPlots Overview
PDF		widget1.pdf

Reference Manual

Details

biocViews	Microarray, TwoChannel, Preprocessing
Depends	R, limma, methods
Imports
Suggests	tkWidgets
System Requirements
License	LGPL
URL	http://www.maths.usyd.edu.au/u/jeany/
Depends On Me	arrayQuality, CGHbase, convert, dyebias, GeneTraffic, maigesPack, nnNorm, OLIN, RMAGEML, stepNorm
Imports Me	arrayQualityMetrics
Suggests Me	Agi4x44PreProcess, AgiMicroRna, hexbin, limma, Mfuzz
Version	1.24.0

Package Downloads

Package Source	marray_1.24.0.tar.gz
Windows Binary	marray_1.24.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	marray_1.24.0.tgz
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