lumi

BeadArray Specific Methods for Illumina Microarrays

Bioconductor version: 2.5

The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level.

Author: Pan Du, Gang Feng, Warren Kibbe, Simon Lin

Maintainer: Pan Du

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("lumi")    

Documentation

PDF		Bioc2007_lumi_presentation.pdf
PDF	R Script	lumi
PDF	R Script	lumi
PDF	R Script	lumi

Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing
Depends	R, annotate, affy, Biobase, mgcv, methods, preprocessCore, RSQLite, MASS
Imports
Suggests	beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db, lumiHumanIDMapping, genefilter, RColorBrewer
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	arrayMvout
Imports Me
Suggests Me	beadarray
Version	1.12.4

Package Downloads

Package Source	lumi_1.12.4.tar.gz
Windows Binary	lumi_1.12.4.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	lumi_1.12.4.tgz
Package Downloads Report	Download Stats