beadarray

Quality assessment and low-level analysis for Illumina BeadArray data

Bioconductor version: 2.5

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie

Maintainer: Mark Dunning

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("beadarray")    

Documentation

PDF		BASH.pdf
PDF	R Script	beadarray.pdf
PDF		beadlevel.pdf
PDF		beadsummary.pdf

Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Preprocessing
Depends	Biobase, methods
Imports	hwriter, limma
Suggests	lumi, vsn, affy
System Requirements
License	GPL
URL
Depends On Me
Imports Me	arrayQualityMetrics
Suggests Me	beadarraySNP, lumi
Version	1.14.0

Package Downloads

Package Source	beadarray_1.14.0.tar.gz
Windows Binary	beadarray_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	beadarray_1.14.0.tgz
Package Downloads Report	Download Stats