Bioconductor version: 2.5
The package contains functions for exploratory oligonucleotide array analysis. The dependance to tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.
Author: Rafael A. Irizarry, Laurent Gautier , Benjamin Milo Bolstad , and Crispin Miller with contributions from Magnus Astrand , Leslie M. Cope , Robert Gentleman, Jeff Gentry, Conrad Halling, Wolfgang Huber, James MacDonald, Benjamin I. P. Rubinstein, Christopher Workman, John Zhang
Maintainer: Rafael A. Irizarry
To install this package, start R and enter:
source("http:///biocLite.R") biocLite("affy")
R Script | 1. Primer | |
R Script | 2. Built-in Processing Methods | |
R Script | 3. Custom Processing Methods | |
R Script | 4. Import Methods |
biocViews | Microarray, OneChannel, Preprocessing |
Depends | R, Biobase |
Imports | affyio, Biobase, graphics, grDevices, methods, preprocessCore, stats, utils |
Suggests | tkWidgets, affydata |
System Requirements | |
License | LGPL (>= 2.0) |
URL | |
Depends On Me | adSplit, affyContam, affycoretools, AffyExpress, affylmGUI, affyPara, affypdnn, affyPLM, affyQCReport, AffyTiling, AgiMicroRna, altcdfenvs, arrayMvout, ArrayTools, bgx, dualKS, ecolitk, exonmap, gcrma, GeneTraffic, Harshlight, logitT, lumi, maDB, makecdfenv, panp, plier, plw, puma, qpcrNorm, RefPlus, rHVDM, RPA, simpleaffy, sscore, Starr, webbioc |
Imports Me | ArrayExpress, arrayQualityMetrics, ArrayTools, gcrma, HTqPCR, matchprobes, puma, simpleaffy, tilingArray, vsn |
Suggests Me | AnnotationDbi, beadarray, beadarraySNP, BiocCaseStudies, Biostrings, BufferedMatrixMethods, factDesign, GeneRegionScan, hexbin, limma, made4, matchprobes, oneChannelGUI, siggenes |
Version | 1.24.2 |
Package Source | affy_1.24.2.tar.gz |
Windows Binary | affy_1.24.2.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | affy_1.24.2.tgz |
Package Downloads Report | Download Stats |
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