adSplit

Annotation-Driven Clustering

Bioconductor version: 2.5

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("adSplit")    

Documentation

PDF	R Script	Annotation-Driven Clustering
PDF		bcb_logo.pdf
PDF		minerva_bcb.pdf

Reference Manual

Details

biocViews	Microarray, Bioinformatics, Clustering
Depends	R, methods, graphics, stats, cluster, multtest, Biobase, affy, GO.db, KEGG.db
Imports
Suggests	golubEsets, vsn, hu6800.db
System Requirements
License	GPL (>= 2)
URL	http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Version	1.16.0

Package Downloads

Package Source	adSplit_1.16.0.tar.gz
Windows Binary	adSplit_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	adSplit_1.16.0.tgz
Package Downloads Report	Download Stats