VanillaICE

A Hidden Markov Model for high throughput genotyping arrays

Bioconductor version: 2.5

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author: Robert Scharpf, Kevin Scharpf, and Ingo Ruczinski

Maintainer: Robert Scharpf

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("VanillaICE")    

Documentation

PDF

R Script

VanillaICE Vignette

Reference Manual

Details

biocViews	Bioinformatics, CopyNumberVariants, SNP, GeneticVariability, Visualization
Depends	R
Imports	SNPchip, stats
Suggests	genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter, RSQLite, oligoClasses, Biobase, methods
System Requirements
License	LGPL-2
URL
Depends On Me
Imports Me
Suggests Me	crlmm, SNPchip
Version	1.8.0

Package Downloads

Package Source	VanillaICE_1.8.0.tar.gz
Windows Binary	VanillaICE_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	VanillaICE_1.8.0.tgz
Package Downloads Report	Download Stats