RNAither

Statistical analysis of high-throughput RNAi screens

Bioconductor version: 2.5

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Nora Rieber

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("RNAither")    

Documentation

PDF

R Script

RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens

Reference Manual

Details

biocViews	CellBasedAssays, QualityControl, Preprocessing, Visualization, Bioinformatics, Annotation, GO
Depends	R, topGO, RankProd, prada
Imports	geneplotter, limma, biomaRt
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.6.1

Package Downloads

Package Source	RNAither_1.6.1.tar.gz
Windows Binary	RNAither_1.6.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	RNAither_1.6.1.tgz
Package Downloads Report	Download Stats