GeneticsBase

Classes and functions for handling genetic data

Bioconductor version: 2.5

The R Genetics Project is a collaborative effort to develop a complete set of tools for storing, accessing, manipulating, and analyzing genetics data, from small candidate-gene studies consisting of a few genetic markers to large whole-genome studies containing hundreds of thousands of markers. This package (GeneticsBase) provides a foundation of efficient data structures and easy-to-use manipulation functions.

Author: Gregory Warnes Ross Lazarus Scott D Chasalow Giovanni Montana Michael O'Connell Junsheng Cheng Nitin Jain

Maintainer: The R Genetics Project

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GeneticsBase")    

Documentation

PDF		CAMP_alleleSummary_html.pdf
PDF		CAMP_genotypeSummary_html.pdf
PDF		CAMP_LD_html.pdf
PDF	R Script	HOWTO: Load Genotype Data
PDF	R Script	Summary Tables
PDF	R Script	Summary Tables

Reference Manual

Details

biocViews	Genetics
Depends	R, methods, combinat, xtable, mvtnorm, haplo.stats
Imports	gdata, gplots, gtools, MASS
Suggests
System Requirements
License	LGPL
URL
Depends On Me	fbat
Imports Me
Suggests Me
Version	1.12.0

Package Downloads

Package Source	GeneticsBase_1.12.0.tar.gz
Windows Binary	GeneticsBase_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GeneticsBase_1.12.0.tgz
Package Downloads Report	Download Stats