GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: 2.5

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis

Maintainer: Sean Davis

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GEOquery")    

Documentation

PDF

R Script

GEOquery.pdf

Reference Manual

Details

biocViews	Microarray, DataImport, OneChannel, TwoChannel, SAGE
Depends	methods, Biobase, RCurl
Imports
Suggests	limma, RUnit
System Requirements
License	GPL-2
URL	http://watson.nci.nih.gov/~sdavis
Depends On Me	GEOmetadb
Imports Me
Suggests Me	dyebias, PGSEA
Version	2.11.3

Package Downloads

Package Source	GEOquery_2.11.3.tar.gz
Windows Binary	GEOquery_2.11.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GEOquery_2.11.3.tgz
Package Downloads Report	Download Stats