CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: 2.5

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Sjoerd Vosse and Mark van de Wiel

Maintainer: Mark van de Wiel

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("CGHcall")    

Documentation

PDF

R Script

CGHcall

Reference Manual

Details

biocViews	Microarray, DNACopyNumber, Preprocessing, Visualization
Depends	R, impute, DNAcopy, methods, Biobase, CGHbase
Imports
Suggests
System Requirements
License	GPL
URL
Depends On Me	CGHnormaliter
Imports Me	CGHnormaliter
Suggests Me
Version	2.6.0

Package Downloads

Package Source	CGHcall_2.6.0.tar.gz
Windows Binary	CGHcall_2.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	CGHcall_2.6.0.tgz
Package Downloads Report	Download Stats