BCRANK

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: 2.5

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur

Maintainer: Adam Ameur

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("BCRANK")    

Documentation

PDF	R Script	BCRANK
PDF		BCRANK_intro_fig1.pdf
PDF		BCRANK_intro_fig2.pdf

Reference Manual

Details

biocViews	SequenceMatching
Depends	methods
Imports	Biostrings
Suggests	seqLogo
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version	1.8.0

Package Downloads

Package Source	BCRANK_1.8.0.tar.gz
Windows Binary	BCRANK_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	BCRANK_1.8.0.tgz
Package Downloads Report	Download Stats