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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MicrobiomeBenchmarkData
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* checking for file ‘MicrobiomeBenchmarkData/DESCRIPTION’ ... OK
* preparing ‘MicrobiomeBenchmarkData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MicrobiomeBenchmarkData.Rmd’ using rmarkdown
1 HMP_2012_16S_gingival_V13
2 HMP_2012_16S_gingival_V35
3 HMP_2012_16S_gingival_V35_subset
4 HMP_2012_WMS_gingival
5 Stammler_2016_16S_spikein
6 Ravel_2011_16S_BV

Use vignette('datasets', package = 'MicrobiomeBenchmarkData') for a detailed description of the datasets.

Use getBenchmarkData(dryrun = FALSE) to import all of the datasets.

Quitting from MicrobiomeBenchmarkData.Rmd:98-101 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BiocFileCache::bfcrpath()`:
! not all 'rnames' found or unique.
---
Backtrace:
    ▆
 1. └─MicrobiomeBenchmarkData::getBenchmarkData(...)
 2.   └─base::lapply(dataset_names, .assembleTreeSummarizedExperiment)
 3.     └─MicrobiomeBenchmarkData (local) FUN(X[[i]], ...)
 4.       └─MicrobiomeBenchmarkData:::.getResourcePath(x, "_taxonomy_tree")
 5.         ├─BiocFileCache::bfcrpath(...)
 6.         └─BiocFileCache::bfcrpath(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MicrobiomeBenchmarkData.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘MicrobiomeBenchmarkData.Rmd’

--- re-building ‘datasets.Rmd’ using rmarkdown
--- finished re-building ‘datasets.Rmd’

--- re-building ‘recalibrare_spikein_data.Rmd’ using rmarkdown

Quitting from recalibrare_spikein_data.Rmd:40-43 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BiocFileCache::bfcrpath()`:
! not all 'rnames' found or unique.
---
Backtrace:
    ▆
 1. └─MicrobiomeBenchmarkData::getBenchmarkData(...)
 2.   └─base::lapply(dataset_names, .assembleTreeSummarizedExperiment)
 3.     └─MicrobiomeBenchmarkData (local) FUN(X[[i]], ...)
 4.       ├─S4Vectors::DataFrame(...)
 5.       ├─utils::read.table(...)
 6.       └─MicrobiomeBenchmarkData:::.getResourcePath(x, "_taxonomy_table")
 7.         ├─BiocFileCache::bfcrpath(...)
 8.         └─BiocFileCache::bfcrpath(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'recalibrare_spikein_data.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘recalibrare_spikein_data.Rmd’

SUMMARY: processing the following files failed:
  ‘MicrobiomeBenchmarkData.Rmd’ ‘recalibrare_spikein_data.Rmd’

Error: Vignette re-building failed.
Execution halted