############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenomeForge ### ############################################################################## ############################################################################## * checking for file ‘BSgenomeForge/DESCRIPTION’ ... OK * preparing ‘BSgenomeForge’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘QuickBSgenomeForge.Rmd’ using rmarkdown trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/729/545/GCA_009729545.1_ASM972954v1/GCA_009729545.1_ASM972954v1_genomic.fna.gz' Content type 'application/x-gzip' length 649859 bytes (634 KB) ================================================== downloaded 634 KB trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/369/605/GCA_008369605.1_ASM836960v1/GCA_008369605.1_ASM836960v1_genomic.fna.gz' Content type 'application/x-gzip' length 1227167 bytes (1.2 MB) ============== downloaded 336 KB Warning in close.connection(con) : Problem closing connection: No space left on device Quitting from lines 86-90 [unnamed-chunk-4] (QuickBSgenomeForge.Rmd) Error: processing vignette 'QuickBSgenomeForge.Rmd' failed with diagnostics: download from 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/369/605/GCA_008369605.1_ASM836960v1/GCA_008369605.1_ASM836960v1_genomic.fna.gz' failed --- failed re-building ‘QuickBSgenomeForge.Rmd’ --- re-building ‘AdvancedBSgenomeForge.Rnw’ using Sweave Failed to query server: Connection timed out Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 Error: processing vignette 'AdvancedBSgenomeForge.Rnw' failed with diagnostics: Running 'texi2dvi' on 'AdvancedBSgenomeForge.tex' failed. --- failed re-building ‘AdvancedBSgenomeForge.Rnw’ SUMMARY: processing the following files failed: ‘QuickBSgenomeForge.Rmd’ ‘AdvancedBSgenomeForge.Rnw’ Error: Vignette re-building failed. Execution halted