############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data xenLite ### ############################################################################## ############################################################################## * checking for file ‘xenLite/DESCRIPTION’ ... OK * preparing ‘xenLite’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘xenLite.Rmd’ using rmarkdown Quitting from xenLite.Rmd:98-106 [dolung] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! NotImplemented: Support for codec 'zstd' not built In order to read this file, you will need to reinstall arrow with additional features enabled. Set one of these environment variables before installing: * Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd') * Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd') See https://arrow.apache.org/docs/r/articles/install.html for details --- Backtrace: ▆ 1. └─xenLite::restoreZipXenSPEP(pa) 2. ├─xenLite::loadGeometry(ans) 3. └─xenLite::loadGeometry(ans) 4. └─arrow::read_parquet(slot(x, "cellbounds_path"), as_data_frame = FALSE) 5. └─base::tryCatch(reader$ReadTable(), error = read_compressed_error) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'xenLite.Rmd' failed with diagnostics: NotImplemented: Support for codec 'zstd' not built In order to read this file, you will need to reinstall arrow with additional features enabled. Set one of these environment variables before installing: * Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd') * Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd') See https://arrow.apache.org/docs/r/articles/install.html for details --- failed re-building ‘xenLite.Rmd’ SUMMARY: processing the following file failed: ‘xenLite.Rmd’ Error: Vignette re-building failed. Execution halted