############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data xcms ### ############################################################################## ############################################################################## * checking for file ‘xcms/DESCRIPTION’ ... OK * preparing ‘xcms’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘LC-MS-feature-grouping.Rmd’ using rmarkdown Error: processing vignette 'LC-MS-feature-grouping.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘LC-MS-feature-grouping.Rmd’ --- re-building ‘xcms-direct-injection.Rmd’ using rmarkdown Error: processing vignette 'xcms-direct-injection.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘xcms-direct-injection.Rmd’ --- re-building ‘xcms-lcms-ms.Rmd’ using rmarkdown Error: processing vignette 'xcms-lcms-ms.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘xcms-lcms-ms.Rmd’ --- re-building ‘xcms.Rmd’ using rmarkdown Error: processing vignette 'xcms.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘xcms.Rmd’ SUMMARY: processing the following files failed: ‘LC-MS-feature-grouping.Rmd’ ‘xcms-direct-injection.Rmd’ ‘xcms-lcms-ms.Rmd’ ‘xcms.Rmd’ Error: Vignette re-building failed. Execution halted