############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL wppi ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'wppi' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading [2024-12-19 16:16:47] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 16:16:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:47] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:47] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-19 16:16:47] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:47] [TRACE] [OmnipathR] Contains 1 files. [2024-12-19 16:16:47] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-19 16:16:47] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 16:16:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:47] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:47] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-12-19 16:16:47] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-19 16:16:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:47] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-19 16:16:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:47] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-19 16:16:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:47] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-19 16:16:47] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:47] [TRACE] [OmnipathR] Cache locked: FALSE Note: wrong number of arguments to '/' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-12-19 16:16:55] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 16:16:55] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:55] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:55] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-19 16:16:55] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:55] [TRACE] [OmnipathR] Contains 1 files. [2024-12-19 16:16:55] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-19 16:16:55] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 16:16:55] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:55] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:55] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-12-19 16:16:55] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-19 16:16:55] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:55] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-19 16:16:55] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:55] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-19 16:16:55] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:55] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-19 16:16:55] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:55] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-12-19 16:16:59] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 16:16:59] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:59] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:59] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-19 16:16:59] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:59] [TRACE] [OmnipathR] Contains 1 files. [2024-12-19 16:16:59] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-19 16:16:59] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 16:16:59] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:59] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-12-19 16:16:59] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-12-19 16:16:59] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-19 16:16:59] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:59] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-19 16:16:59] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:59] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-19 16:16:59] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:59] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-19 16:16:59] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 16:16:59] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (wppi)