##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ttgsea
###
##############################################################################
##############################################################################


* checking for file ‘ttgsea/DESCRIPTION’ ... OK
* preparing ‘ttgsea’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ttgsea.Rmd’ using rmarkdown
/home/biocbuild/.local/lib/python3.11/site-packages/keras/src/layers/core/embedding.py:90: UserWarning: Argument `input_length` is deprecated. Just remove it.
  warnings.warn(

Quitting from lines 90-117 [unnamed-chunk-2] (ttgsea.Rmd)
Error: processing vignette 'ttgsea.Rmd' failed with diagnostics:
no applicable method for 'compile' applied to an object of class "c('keras.src.models.functional.Functional', 'keras.models.functional.Functional', 'keras.src.ops.function.Function', 'keras.ops.function.Function', 'keras.src.models.model.Model', 'keras.models.model.Model', 'keras.src.backend.tensorflow.trainer.TensorFlowTrainer', 'keras.backend.tensorflow.trainer.TensorFlowTrainer', 'keras.src.trainers.trainer.Trainer', 'keras.trainers.trainer.Trainer', 'keras.src.layers.layer.Layer', 'keras.layers.layer.Layer', 'keras.src.backend.tensorflow.layer.TFLayer', 'keras.backend.tensorflow.layer.TFLayer', 'keras.src.backend.tensorflow.trackable.KerasAutoTrackable', 'keras.backend.tensorflow.trackable.KerasAutoTrackable', 'tensorflow.python.trackable.autotrackable.AutoTrackable', 'tensorflow.python.trackable.base.Trackable', 'keras.src.ops.operation.Operation', 'keras.ops.operation.Operation', 'keras.src.saving.keras_saveable.KerasSaveable', 'keras.saving.keras_saveable.KerasSaveable', 'python.builtin.object')"
--- failed re-building ‘ttgsea.Rmd’

SUMMARY: processing the following file failed:
  ‘ttgsea.Rmd’

Error: Vignette re-building failed.
Execution halted