############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data tidytof ### ############################################################################## ############################################################################## * checking for file ‘tidytof/DESCRIPTION’ ... OK * preparing ‘tidytof’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘quality-control.Rmd’ using rmarkdown Error: processing vignette 'quality-control.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘quality-control.Rmd’ --- re-building ‘clustering.Rmd’ using knitr --- finished re-building ‘clustering.Rmd’ --- re-building ‘contributing-to-tidytof.Rmd’ using knitr --- finished re-building ‘contributing-to-tidytof.Rmd’ --- re-building ‘differential-discovery-analysis.Rmd’ using knitr --- finished re-building ‘differential-discovery-analysis.Rmd’ --- re-building ‘dimensionality-reduction.Rmd’ using knitr --- finished re-building ‘dimensionality-reduction.Rmd’ --- re-building ‘downsampling.Rmd’ using knitr --- finished re-building ‘downsampling.Rmd’ --- re-building ‘feature-extraction.Rmd’ using knitr --- finished re-building ‘feature-extraction.Rmd’ --- re-building ‘modeling.Rmd’ using knitr --- finished re-building ‘modeling.Rmd’ --- re-building ‘preprocessing.Rmd’ using knitr --- finished re-building ‘preprocessing.Rmd’ --- re-building ‘reading-and-writing-data.Rmd’ using knitr --- finished re-building ‘reading-and-writing-data.Rmd’ --- re-building ‘tidytof.Rmd’ using knitr --- finished re-building ‘tidytof.Rmd’ SUMMARY: processing the following file failed: ‘quality-control.Rmd’ Error: Vignette re-building failed. Execution halted