############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data signatureSearch ### ############################################################################## ############################################################################## * checking for file ‘signatureSearch/DESCRIPTION’ ... OK * preparing ‘signatureSearch’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘signatureSearch.Rmd’ using rmarkdown Quitting from lines 976-982 [tsea_dup_hyperG_kegg] (signatureSearch.Rmd) Error: processing vignette 'signatureSearch.Rmd' failed with diagnostics: cannot open the connection to 'https://rest.kegg.jp/link/hsa/pathway' --- failed re-building ‘signatureSearch.Rmd’ SUMMARY: processing the following file failed: ‘signatureSearch.Rmd’ Error: Vignette re-building failed. Execution halted