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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scviR
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* checking for file ‘scviR/DESCRIPTION’ ... OK
* preparing ‘scviR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘citeseq_tut.Rmd’ using rmarkdown
trying URL 'https://mghp.osn.xsede.org/bir190004-bucket01/BiocScviR/pbmc_citeseq_5k10k.h5ad.gz'
Content type 'application/octet-stream' length 51844928 bytes (49.4 MB)
==================================================
downloaded 49.4 MB

/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.18.0/scviR/1.6.0/bsklenv/lib/python3.10/site-packages/anndata/__init__.py:51: FutureWarning: `anndata.read` is deprecated, use `anndata.read_h5ad` instead. `ad.read` will be removed in mid 2024.
  warnings.warn(
trying URL 'https://mghp.osn.xsede.org/bir190004-bucket01/BiocScviR/vae2_ov.zip'
Content type 'application/zip' length 16477936 bytes (15.7 MB)
==================================================
downloaded 15.7 MB

/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.18.0/scviR/1.6.0/bsklenv/lib/python3.10/site-packages/anndata/__init__.py:51: FutureWarning: `anndata.read` is deprecated, use `anndata.read_h5ad` instead. `ad.read` will be removed in mid 2024.
  warnings.warn(

Quitting from lines 57-58 [dogetv] (citeseq_tut.Rmd)
Error: processing vignette 'citeseq_tut.Rmd' failed with diagnostics:
RuntimeWarning: 
Found Intel OpenMP ('libiomp') and LLVM OpenMP ('libomp') loaded at
the same time. Both libraries are known to be incompatible and this
can cause random crashes or deadlocks on Linux when loaded in the
same Python program.
Using threadpoolctl may cause crashes or deadlocks. For more
information and possible workarounds, please see
    https://github.com/joblib/threadpoolctl/blob/master/multiple_openmp.md

Run `reticulate::py_last_error()` for details.
--- failed re-building ‘citeseq_tut.Rmd’

--- re-building ‘compch12.Rmd’ using rmarkdown
trying URL 'https://mghp.osn.xsede.org/bir190004-bucket01/BiocScviR/ch12sce.rda'
Content type 'application/octet-stream' length 58079368 bytes (55.4 MB)
==================================================
downloaded 55.4 MB

trying URL 'https://mghp.osn.xsede.org/bir190004-bucket01/BiocScviR/full_5k10k_totalVI.h5ad'
Content type 'application/octet-stream' length 1216903940 bytes (1160.5 MB)
==================================================
downloaded 1160.5 MB

/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.18.0/scviR/1.6.0/bsklenv/lib/python3.10/site-packages/anndata/__init__.py:51: FutureWarning: `anndata.read` is deprecated, use `anndata.read_h5ad` instead. `ad.read` will be removed in mid 2024.
  warnings.warn(
trying URL 'https://mghp.osn.xsede.org/bir190004-bucket01/BiocScviR/ch12_allsce.rda'
Content type 'application/octet-stream' length 73798386 bytes (70.4 MB)
==================================================
downloaded 70.4 MB

--- finished re-building ‘compch12.Rmd’

--- re-building ‘scviR.Rmd’ using rmarkdown
--- finished re-building ‘scviR.Rmd’

SUMMARY: processing the following file failed:
  ‘citeseq_tut.Rmd’

Error: Vignette re-building failed.
Execution halted