Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:05 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1879/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scHOT 1.18.0 (landing page) Shila Ghazanfar
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the scHOT package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scHOT.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: scHOT |
Version: 1.18.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:scHOT.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings scHOT_1.18.0.tar.gz |
StartedAt: 2024-12-20 05:42:58 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 05:48:19 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 320.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: scHOT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:scHOT.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings scHOT_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/scHOT.Rcheck' * using R version 4.4.2 (2024-10-31 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'scHOT/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'scHOT' version '1.18.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'scHOT' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed scHOT 32.29 0.97 33.35 scHOT_estimatePvalues 30.28 0.92 31.23 scHOT_performPermutationTest 30.28 0.89 31.22 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
scHOT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL scHOT ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'scHOT' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scHOT)
scHOT.Rcheck/scHOT-Ex.timings
name | user | system | elapsed | |
params-set | 0.34 | 0.03 | 0.38 | |
plotColouredExpression | 1.08 | 0.03 | 1.11 | |
plotHigherOrderSequence | 2.67 | 0.03 | 2.70 | |
positionColData-set | 0.11 | 0.02 | 0.12 | |
positionType-set | 0.10 | 0.01 | 0.11 | |
scHOT | 32.29 | 0.97 | 33.35 | |
scHOT_addTestingScaffold | 0.11 | 0.00 | 0.11 | |
scHOT_buildFromMatrix | 0.08 | 0.00 | 0.08 | |
scHOT_buildFromSCE | 0.30 | 0.03 | 0.32 | |
scHOT_calculateGlobalHigherOrderFunction | 0.15 | 0.00 | 0.16 | |
scHOT_calculateHigherOrderTestStatistics | 0.57 | 0.05 | 0.61 | |
scHOT_estimatePvalues | 30.28 | 0.92 | 31.23 | |
scHOT_output-set | 0.11 | 0.00 | 0.11 | |
scHOT_performPermutationTest | 30.28 | 0.89 | 31.22 | |
scHOT_setPermutationScaffold | 0.17 | 0.00 | 0.17 | |
scHOT_setWeightMatrix | 0.14 | 0.02 | 0.16 | |
scHOT_stripOutput | 0.11 | 0.00 | 0.11 | |
spatialWeightMatrix | 0 | 0 | 0 | |
testingScaffold-set | 0.14 | 0.01 | 0.16 | |
thin | 0.01 | 0.00 | 0.02 | |
trajectoryWeightMatrix | 0 | 0 | 0 | |
weightMatrix-set | 0.33 | 0.05 | 0.37 | |
weightedPearson | 0 | 0 | 0 | |
weightedSpearman | 0 | 0 | 0 | |
weightedVariance | 0 | 0 | 0 | |
weightedZIKendall | 0 | 0 | 0 | |
weightedZISpearman | 0 | 0 | 0 | |