############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL rqubic ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘rqubic’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c bicluster.c -o bicluster.o bicluster.c: In function ‘seed_intersect_r’: bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 354 | if (flag=ss) (*m_cnt)++; | ^~~~ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c discretize.c -o discretize.o In file included from discretize.c:9: rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable] 62 | static const char *MINCOL_ATT_NAME="minimumCol"; | ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable] 61 | static const char *EDGELIST_ATT_NAME="edgelist"; | ^~~~~~~~~~~~~~~~~ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fib.c -o fib.o In file included from fib.c:35: rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable] 62 | static const char *MINCOL_ATT_NAME="minimumCol"; | ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable] 61 | static const char *EDGELIST_ATT_NAME="edgelist"; | ^~~~~~~~~~~~~~~~~ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c graph.c -o graph.o In function ‘compare_edges’, inlined from ‘fh_insert_fixed’ at graph.c:41:9, inlined from ‘generate_sorted_seeds’ at graph.c:147:7: graph.c:31:13: warning: array subscript ‘struct Edge[0]’ is partly outside array bounds of ‘struct Edge[0]’ [-Warray-bounds=] 31 | const int score_a = ((pEdge)a)->score; | ^~~~~~~ graph.c: In function ‘generate_sorted_seeds’: graph.c:131:9: note: object ‘_cur_min’ of size 8 131 | pEdge _cur_min = &__cur_min; | ^~~~~~~~ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c rqubic.c -o rqubic.o In file included from rqubic.c:5: rqubic.h:62:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable] 62 | static const char *MINCOL_ATT_NAME="minimumCol"; | ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable] 61 | static const char *EDGELIST_ATT_NAME="edgelist"; | ^~~~~~~~~~~~~~~~~ gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o rqubic.so bicluster.o discretize.o fib.o graph.o rqubic.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-rqubic/00new/rqubic/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rqubic)