############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data roastgsa ### ############################################################################## ############################################################################## * checking for file ‘roastgsa/DESCRIPTION’ ... OK * preparing ‘roastgsa’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘roastgsaExample_RNAseq.Rmd’ using rmarkdown Error: processing vignette 'roastgsaExample_RNAseq.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘roastgsaExample_RNAseq.Rmd’ --- re-building ‘roastgsaExample_genesetcollections.Rmd’ using rmarkdown Error: processing vignette 'roastgsaExample_genesetcollections.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘roastgsaExample_genesetcollections.Rmd’ --- re-building ‘roastgsaExample_main.Rmd’ using rmarkdown Error: processing vignette 'roastgsaExample_main.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘roastgsaExample_main.Rmd’ SUMMARY: processing the following files failed: ‘roastgsaExample_RNAseq.Rmd’ ‘roastgsaExample_genesetcollections.Rmd’ ‘roastgsaExample_main.Rmd’ Error: Vignette re-building failed. Execution halted