############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data rfaRm ### ############################################################################## ############################################################################## * checking for file ‘rfaRm/DESCRIPTION’ ... OK * preparing ‘rfaRm’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘rfaRm.Rmd’ using rmarkdown Quitting from rfaRm.Rmd:73-83 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `base::strsplit()`: ! non-character argument --- Backtrace: ▆ 1. └─rfaRm::rfamSequenceSearch("GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC") 2. └─rfaRm:::rfamRetrieveSequenceSearchResult2(...) 3. ├─BiocGenerics::lapply(...) 4. └─base::lapply(...) 5. └─rfaRm (local) FUN(X[[i]], ...) 6. ├─Biostrings::strsplit(alignment, "\n") 7. └─Biostrings::strsplit(alignment, "\n") 8. └─base::strsplit(x, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'rfaRm.Rmd' failed with diagnostics: non-character argument --- failed re-building ‘rfaRm.Rmd’ SUMMARY: processing the following file failed: ‘rfaRm.Rmd’ Error: Vignette re-building failed. Execution halted