############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation ### ############################################################################## ############################################################################## * checking for file ‘recountmethylation/DESCRIPTION’ ... OK * preparing ‘recountmethylation’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cpg_probe_annotations.Rmd’ using rmarkdown Error: processing vignette 'cpg_probe_annotations.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘cpg_probe_annotations.Rmd’ --- re-building ‘exporting_saving_data.Rmd’ using rmarkdown Error: processing vignette 'exporting_saving_data.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘exporting_saving_data.Rmd’ --- re-building ‘recountmethylation_data_analyses.Rmd’ using rmarkdown Error: processing vignette 'recountmethylation_data_analyses.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘recountmethylation_data_analyses.Rmd’ --- re-building ‘recountmethylation_glint.Rmd’ using rmarkdown Error: processing vignette 'recountmethylation_glint.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘recountmethylation_glint.Rmd’ --- re-building ‘recountmethylation_pwrewas.Rmd’ using rmarkdown Error: processing vignette 'recountmethylation_pwrewas.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘recountmethylation_pwrewas.Rmd’ --- re-building ‘recountmethylation_search_index.Rmd’ using rmarkdown Error: processing vignette 'recountmethylation_search_index.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘recountmethylation_search_index.Rmd’ --- re-building ‘recountmethylation_users_guide.Rmd’ using rmarkdown Error: processing vignette 'recountmethylation_users_guide.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘recountmethylation_users_guide.Rmd’ SUMMARY: processing the following files failed: ‘cpg_probe_annotations.Rmd’ ‘exporting_saving_data.Rmd’ ‘recountmethylation_data_analyses.Rmd’ ‘recountmethylation_glint.Rmd’ ‘recountmethylation_pwrewas.Rmd’ ‘recountmethylation_search_index.Rmd’ ‘recountmethylation_users_guide.Rmd’ Error: Vignette re-building failed. Execution halted