############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data phosphonormalizer ### ############################################################################## ############################################################################## * checking for file ‘phosphonormalizer/DESCRIPTION’ ... OK * preparing ‘phosphonormalizer’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘vignette.Rmd’ using rmarkdown Error: processing vignette 'vignette.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘vignette.Rmd’ --- re-building ‘phosphonormalizer.Rnw’ using Sweave The number of peptides in the intersect is: 54 1 plots generated. Browse through them. --- finished re-building ‘phosphonormalizer.Rnw’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted