############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pgxRpi ### ############################################################################## ############################################################################## * checking for file ‘pgxRpi/DESCRIPTION’ ... OK * preparing ‘pgxRpi’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Introduction_1_loadmetadata.Rmd’ using rmarkdown Quitting from lines 155-158 [unnamed-chunk-12] (Introduction_1_loadmetadata.Rmd) Error: processing vignette 'Introduction_1_loadmetadata.Rmd' failed with diagnostics: No data retrieved --- failed re-building ‘Introduction_1_loadmetadata.Rmd’ --- re-building ‘Introduction_2_loadvariants.Rmd’ using rmarkdown --- finished re-building ‘Introduction_2_loadvariants.Rmd’ --- re-building ‘Introduction_3_loadfrequency.Rmd’ using rmarkdown 2024-11-08 18:38:14.157 R[56764:2676081] XType: Using static font registry. --- finished re-building ‘Introduction_3_loadfrequency.Rmd’ --- re-building ‘Introduction_4_process_pgxseg.Rmd’ using rmarkdown --- finished re-building ‘Introduction_4_process_pgxseg.Rmd’ SUMMARY: processing the following file failed: ‘Introduction_1_loadmetadata.Rmd’ Error: Vignette re-building failed. Execution halted