############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL omXplore ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘omXplore’ ... ** this is package ‘omXplore’ version ‘1.2.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import ‘bs4Dash::box’ by ‘graphics::box’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::column’ by ‘shiny::column’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::actionButton’ by ‘shiny::actionButton’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::tabsetPanel’ by ‘shiny::tabsetPanel’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::insertTab’ by ‘shiny::insertTab’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::navbarMenu’ by ‘shiny::navbarMenu’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::removePopover’ by ‘shinyBS::removePopover’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::addPopover’ by ‘shinyBS::addPopover’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::addTooltip’ by ‘shinyBS::addTooltip’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::createAlert’ by ‘shinyBS::createAlert’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::closeAlert’ by ‘shinyBS::closeAlert’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::removeTooltip’ by ‘shinyBS::removeTooltip’ when loading ‘omXplore’ Warning: replacing previous import ‘shiny::dataTableOutput’ by ‘DT::dataTableOutput’ when loading ‘omXplore’ Warning: replacing previous import ‘shiny::renderDataTable’ by ‘DT::renderDataTable’ when loading ‘omXplore’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import ‘bs4Dash::box’ by ‘graphics::box’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::column’ by ‘shiny::column’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::actionButton’ by ‘shiny::actionButton’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::tabsetPanel’ by ‘shiny::tabsetPanel’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::insertTab’ by ‘shiny::insertTab’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::navbarMenu’ by ‘shiny::navbarMenu’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::removePopover’ by ‘shinyBS::removePopover’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::addPopover’ by ‘shinyBS::addPopover’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::addTooltip’ by ‘shinyBS::addTooltip’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::createAlert’ by ‘shinyBS::createAlert’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::closeAlert’ by ‘shinyBS::closeAlert’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::removeTooltip’ by ‘shinyBS::removeTooltip’ when loading ‘omXplore’ Warning: replacing previous import ‘shiny::dataTableOutput’ by ‘DT::dataTableOutput’ when loading ‘omXplore’ Warning: replacing previous import ‘shiny::renderDataTable’ by ‘DT::renderDataTable’ when loading ‘omXplore’ ** testing if installed package can be loaded from final location Warning: replacing previous import ‘bs4Dash::box’ by ‘graphics::box’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::column’ by ‘shiny::column’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::actionButton’ by ‘shiny::actionButton’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::tabsetPanel’ by ‘shiny::tabsetPanel’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::insertTab’ by ‘shiny::insertTab’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::navbarMenu’ by ‘shiny::navbarMenu’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::removePopover’ by ‘shinyBS::removePopover’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::addPopover’ by ‘shinyBS::addPopover’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::addTooltip’ by ‘shinyBS::addTooltip’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::createAlert’ by ‘shinyBS::createAlert’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::closeAlert’ by ‘shinyBS::closeAlert’ when loading ‘omXplore’ Warning: replacing previous import ‘bs4Dash::removeTooltip’ by ‘shinyBS::removeTooltip’ when loading ‘omXplore’ Warning: replacing previous import ‘shiny::dataTableOutput’ by ‘DT::dataTableOutput’ when loading ‘omXplore’ Warning: replacing previous import ‘shiny::renderDataTable’ by ‘DT::renderDataTable’ when loading ‘omXplore’ ** testing if installed package keeps a record of temporary installation path * DONE (omXplore)