############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data nullranges ### ############################################################################## ############################################################################## * checking for file ‘nullranges/DESCRIPTION’ ... OK * preparing ‘nullranges’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘bootRanges.Rmd’ using rmarkdown Error: processing vignette 'bootRanges.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘bootRanges.Rmd’ --- re-building ‘matchRanges.Rmd’ using rmarkdown Error: processing vignette 'matchRanges.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘matchRanges.Rmd’ --- re-building ‘matching_ginteractions.Rmd’ using rmarkdown Error: processing vignette 'matching_ginteractions.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘matching_ginteractions.Rmd’ --- re-building ‘matching_granges.Rmd’ using rmarkdown Error: processing vignette 'matching_granges.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘matching_granges.Rmd’ --- re-building ‘matching_pool_set.Rmd’ using rmarkdown Error: processing vignette 'matching_pool_set.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘matching_pool_set.Rmd’ --- re-building ‘nullranges.Rmd’ using rmarkdown Error: processing vignette 'nullranges.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building ‘nullranges.Rmd’ SUMMARY: processing the following files failed: ‘bootRanges.Rmd’ ‘matchRanges.Rmd’ ‘matching_ginteractions.Rmd’ ‘matching_granges.Rmd’ ‘matching_pool_set.Rmd’ ‘nullranges.Rmd’ Error: Vignette re-building failed. Execution halted