############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL motifcounter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘motifcounter’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Rbackground.c -o Rbackground.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Rcombinatorial.c -o Rcombinatorial.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Rcompoundpoisson.c -o Rcompoundpoisson.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Rminmaxscore.c -o Rminmaxscore.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Roption.c -o Roption.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Roverlap.c -o Roverlap.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Rscore1d.c -o Rscore1d.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Rsequence.c -o Rsequence.o Rsequence.c:143:21: warning: unused variable 'noscores' [-Wunused-variable] int mins, maxs, noscores; ^ 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c Rsimulate.c -o Rsimulate.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c background.c -o background.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c combinatorial.c -o combinatorial.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c compoundpoisson.c -o compoundpoisson.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c markovchain.c -o markovchain.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c markovchain_single.c -o markovchain_single.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c matrix.c -o matrix.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c mdist_register.c -o mdist_register.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c minmaxscore.c -o minmaxscore.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c overlap.c -o overlap.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c score1d.c -o score1d.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c score2d.c -o score2d.o score2d.c:597:15: warning: variable 'p0' set but not used [-Wunused-but-set-variable] double p, p0 = 0.0, p1 = 0.0, ptmp; ^ score2d.c:597:25: warning: variable 'p1' set but not used [-Wunused-but-set-variable] double p, p0 = 0.0, p1 = 0.0, ptmp; ^ 2 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c scorefunctions.c -o scorefunctions.o scorefunctions.c:84:22: warning: unused variable 'cindex' [-Wunused-variable] int j, i, index, cindex, ds; ^ scorefunctions.c:119:17: warning: unused variable 'cindex' [-Wunused-variable] int s, index, cindex; ^ scorefunctions.c:159:19: warning: unused variable 'cindex' [-Wunused-variable] int s, index, cindex; ^ 3 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c sequence.c -o sequence.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DIN_R -fPIC -falign-functions=64 -Wall -g -O2 -c simulate.c -o simulate.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o motifcounter.so Rbackground.o Rcombinatorial.o Rcompoundpoisson.o Rminmaxscore.o Roption.o Roverlap.o Rscore1d.o Rsequence.o Rsimulate.o background.o combinatorial.o compoundpoisson.o markovchain.o markovchain_single.o matrix.o mdist_register.o minmaxscore.o overlap.o score1d.o score2d.o scorefunctions.o sequence.o simulate.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-motifcounter/00new/motifcounter/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (motifcounter)