############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data mitch ### ############################################################################## ############################################################################## * checking for file ‘mitch/DESCRIPTION’ ... OK * preparing ‘mitch’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘infiniumMethArrayWorkflow.Rmd’ using rmarkdown --- finished re-building ‘infiniumMethArrayWorkflow.Rmd’ --- re-building ‘mitchWorkflow.Rmd’ using rmarkdown trying URL 'https://reactome.org/download/current/ReactomePathways.gmt.zip' Content type 'application/zip' length 276644 bytes (270 KB) ================================================== downloaded 270 KB Quitting from lines 207-208 [plots] (mitchWorkflow.Rmd) Error: processing vignette 'mitchWorkflow.Rmd' failed with diagnostics: non-numeric argument to binary operator --- failed re-building ‘mitchWorkflow.Rmd’ SUMMARY: processing the following file failed: ‘mitchWorkflow.Rmd’ Error: Vignette re-building failed. Execution halted