############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf miRspongeR.buildbin-libdir && mkdir miRspongeR.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=miRspongeR.buildbin-libdir miRspongeR_2.10.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'miRspongeR' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' gcc -I"F:/biocbuild/bbs-3.20-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c complex.c -o complex.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o /bin/sh: -c: line 1: unexpected EOF while looking for matching `"' /bin/sh: -c: line 1: unexpected EOF while looking for matching `"' /bin/sh: -c: line 1: unexpected EOF while looking for matching `"' /bin/sh: -c: line 1: unexpected EOF while looking for matching `"' gcc -shared -s -static-libgcc -o miRspongeR.dll tmp.def complex.o registerDynamicSymbol.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/miRspongeR.buildbin-libdir/00LOCK-miRspongeR/00new/miRspongeR/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE' Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE' Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE' Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE' Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE' Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE' Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE' Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE' Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE' Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE' Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE' Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE' Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE' ** testing if installed package can be loaded from final location Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE' Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE' Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE' Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE' Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE' Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE' Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE' ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'miRspongeR' as miRspongeR_2.10.0.zip * DONE (miRspongeR)