############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL iCARE ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘iCARE’ ... ** this is package ‘iCARE’ version ‘1.36.0’ ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c source.c -o source.o source.c: In function ‘dVec_alloc’: source.c:45:10: warning: old-style function definition [-Wold-style-definition] 45 | double * dVec_alloc(n, initFlag, initVal) | ^~~~~~~~~~ source.c: In function ‘iVec_alloc’: source.c:64:7: warning: old-style function definition [-Wold-style-definition] 64 | int * iVec_alloc(n, initFlag, initVal) | ^~~~~~~~~~ source.c: In function ‘dMat_alloc’: source.c:81:11: warning: old-style function definition [-Wold-style-definition] 81 | double ** dMat_alloc(nrow, ncol, initFlag, initVal) | ^~~~~~~~~~ source.c: In function ‘matrix_free’: source.c:98:6: warning: old-style function definition [-Wold-style-definition] 98 | void matrix_free(x, n) | ^~~~~~~~~~~ source.c: In function ‘get_non_miss’: source.c:114:12: warning: old-style function definition [-Wold-style-definition] 114 | static int get_non_miss(vec, n, ovec) | ^~~~~~~~~~~~ source.c: In function ‘X_y’: source.c:135:13: warning: old-style function definition [-Wold-style-definition] 135 | static void X_y(X, nr, nc, y, index, ni, ret) | ^~~ source.c: In function ‘X_y2’: source.c:155:13: warning: old-style function definition [-Wold-style-definition] 155 | static void X_y2(X, nc, y, z, index, ni, ret) | ^~~~ source.c: In function ‘vec_mult’: source.c:185:15: warning: old-style function definition [-Wold-style-definition] 185 | static double vec_mult(x, y, index, ni) | ^~~~~~~~ source.c: In function ‘vec_lteq_c’: source.c:203:12: warning: old-style function definition [-Wold-style-definition] 203 | static int vec_lteq_c(vec, n, c) | ^~~~~~~~~~ source.c: In function ‘mean_2val’: source.c:224:15: warning: old-style function definition [-Wold-style-definition] 224 | static double mean_2val(vec, subvec, nsub, weights) | ^~~~~~~~~ source.c: In function ‘mat_from_vec’: source.c:241:13: warning: old-style function definition [-Wold-style-definition] 241 | static void mat_from_vec(vec, nr, nc, mat) | ^~~~~~~~~~~~ source.c: In function ‘quant_vecs’: source.c:256:12: warning: old-style function definition [-Wold-style-definition] 256 | static int quant_vecs(probs, nprobs, n, ivec, lo, hi, h) | ^~~~~~~~~~ source.c: In function ‘quantile’: source.c:284:13: warning: old-style function definition [-Wold-style-definition] 284 | static void quantile(x, n, probs, nprobs, lo, hi, h, ivec, ni, qs) | ^~~~~~~~ source.c: In function ‘var_dvec’: source.c:338:15: warning: old-style function definition [-Wold-style-definition] 338 | static double var_dvec(vec, n) | ^~~~~~~~ source.c: In function ‘get_cutpoints’: source.c:358:12: warning: old-style function definition [-Wold-style-definition] 358 | static int get_cutpoints(quantiles, nq, ref_LP, nref) | ^~~~~~~~~~~~~ source.c: In function ‘get_miss_perc’: source.c:406:12: warning: old-style function definition [-Wold-style-definition] 406 | static int get_miss_perc(cutpoints, ncuts, miss_LP) | ^~~~~~~~~~~~~ source.c: In function ‘vec_ab’: source.c:427:12: warning: old-style function definition [-Wold-style-definition] 427 | static int vec_ab(x, n, a, b) | ^~~~~~ source.c: In function ‘get_newEndpoints’: source.c:444:13: warning: old-style function definition [-Wold-style-definition] 444 | static void get_newEndpoints(cutpoints, ncuts, miss_LP, miss_perc, ref_LP, nref, rcut1, rcut2) | ^~~~~~~~~~~~~~~~ source.c: In function ‘get_subs_2cut’: source.c:471:12: warning: old-style function definition [-Wold-style-definition] 471 | static int get_subs_2cut(x, n, a, b, ret) | ^~~~~~~~~~~~~ source.c: In function ‘get_wgts’: source.c:493:13: warning: old-style function definition [-Wold-style-definition] 493 | static void get_wgts(weights, subvec, nsub, retvec) | ^~~~~~~~ source.c: In function ‘ref_risk1’: source.c:511:6: warning: old-style function definition [-Wold-style-definition] 511 | void ref_risk1(ref_risks, betavec, zmat, refmat, n_beta, nr_z, nc_z, nr_ref, nc_ref, | ^~~~~~~~~ source.c: In function ‘get_int’: source.c:619:13: warning: old-style function definition [-Wold-style-definition] 619 | static void get_int(nsub, age_new, t, aexp_rr, lambda, comp, zbeta, holder) | ^~~~~~~ source.c: In function ‘finalVal’: source.c:645:15: warning: old-style function definition [-Wold-style-definition] 645 | static double finalVal(nsub, zbeta, expzbeta, age_new, age_int, lambda, loglambda, compRates, holder, tempv, weights) | ^~~~~~~~ source.c: In function ‘ref_risk2’: source.c:684:6: warning: old-style function definition [-Wold-style-definition] 684 | void ref_risk2(betavec, zmat, refmat, n_beta, nr_z, nc_z, nr_ref, nc_ref, | ^~~~~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o iCARE.so source.o -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-iCARE/00new/iCARE/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iCARE)