############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=iBMQ.buildbin-libdir iBMQ_1.46.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'iBMQ' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ARS.c -o ARS.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RngStream.c -o RngStream.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c iBMQ_common.c -o iBMQ_common.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c main_parallel_sparse.c -o main_parallel_sparse.o main_parallel_sparse.c: In function 'iBMQ_main': main_parallel_sparse.c:255:33: warning: 'Pfile' may be used uninitialized [-Wmaybe-uninitialized] 255 | store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | n_snps, n_genes, A, B, P, Mu, Sig2, C); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main_parallel_sparse.c:83:15: note: 'Pfile' was declared here 83 | FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile; | ^~~~~ main_parallel_sparse.c:255:33: warning: 'Afile' may be used uninitialized [-Wmaybe-uninitialized] 255 | store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | n_snps, n_genes, A, B, P, Mu, Sig2, C); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main_parallel_sparse.c:83:23: note: 'Afile' was declared here 83 | FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile; | ^~~~~ main_parallel_sparse.c:255:33: warning: 'Bfile' may be used uninitialized [-Wmaybe-uninitialized] 255 | store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | n_snps, n_genes, A, B, P, Mu, Sig2, C); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main_parallel_sparse.c:83:31: note: 'Bfile' was declared here 83 | FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile; | ^~~~~ main_parallel_sparse.c:255:33: warning: 'Mufile' may be used uninitialized [-Wmaybe-uninitialized] 255 | store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | n_snps, n_genes, A, B, P, Mu, Sig2, C); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main_parallel_sparse.c:83:39: note: 'Mufile' was declared here 83 | FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile; | ^~~~~~ main_parallel_sparse.c:255:33: warning: 'Sig2file' may be used uninitialized [-Wmaybe-uninitialized] 255 | store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | n_snps, n_genes, A, B, P, Mu, Sig2, C); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main_parallel_sparse.c:83:48: note: 'Sig2file' was declared here 83 | FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile; | ^~~~~~~~ main_parallel_sparse.c:255:33: warning: 'Cfile' may be used uninitialized [-Wmaybe-uninitialized] 255 | store_mcmc_output(Afile, Bfile, Pfile, Mufile, Sig2file, Cfile, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | n_snps, n_genes, A, B, P, Mu, Sig2, C); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main_parallel_sparse.c:83:59: note: 'Cfile' was declared here 83 | FILE *Pfile, *Afile, *Bfile, *Mufile, *Sig2file, *Cfile; | ^~~~~ gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c norm_gamma_generation.c -o norm_gamma_generation.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sparse.c -o sparse.o gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/x64/lib -lgsl -lgslcblas -lm -fopenmp -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/iBMQ.buildbin-libdir/00LOCK-iBMQ/00new/iBMQ/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'iBMQ' as iBMQ_1.46.0.zip * DONE (iBMQ)