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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gINTomics
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘gINTomics’ ...
** using staged installation
** R
[2024-12-19 16:11:42] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 16:11:42] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:11:42] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:11:42] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-19 16:11:42] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:11:42] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-19 16:11:42] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-19 16:11:42] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 16:11:42] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:11:42] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:11:43] [TRACE]   [OmnipathR] Cache locked: FALSE



** data
** inst
** byte-compile and prepare package for lazy loading
[2024-12-19 16:12:17] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 16:12:17] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:12:17] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:12:17] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-19 16:12:17] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:12:17] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-19 16:12:17] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-19 16:12:17] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 16:12:17] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:12:17] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:12:18] [TRACE]   [OmnipathR] Cache locked: FALSE
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:03] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:03] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:03] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:38] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:38] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 16:13:38] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (gINTomics)