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###
### Running command:
###
###   rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gINTomics_1.2.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R gINTomics.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gINTomics.buildbin-libdir gINTomics_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package ‘gINTomics’ ...
** using staged installation
** R
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:29:34] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Contains 6 files.
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:29:34] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:29:34] [TRACE]   [OmnipathR] Cache locked: FALSE



** data
** inst
** byte-compile and prepare package for lazy loading
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:11] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:11] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:11] [TRACE]   [OmnipathR] Cache locked: FALSE
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-12-20 12:30:58] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-20 12:30:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:58] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:30:58] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-20 12:30:58] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:30:58] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-20 12:30:58] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-20 12:30:58] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-20 12:30:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:58] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:30:59] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:31:34] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:31:34] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-20 12:31:34] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:31:35] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-20 12:31:35] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-20 12:31:35] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (gINTomics)